Artificial Biochemistry

University of Trento Information and Communication Technology

International Doctorate School ICT Doctorate Course 21414
<http://dit.unitn.it/edu/ict/courseinfo.xml?courseid=21414&year=2006>

2006-05-22..26

Luca Cardelli

Microsoft Research,
MSR-unitn Centre for Computational and Systems Biology,
ICT Visiting Professor

Lectures (All: .zip 16M)

One: Biology
Two: Stochastics
Three: Chemistry
- Chemistry and Processes
  - Case Studies: Scaling Reactions
  - Case Studies: ERK Pathway
- From Processes to ODEs
  - Case Studies: Epidemics ODE
  - Case Studies: Groupies ODE
Four: Biochemistry
Five: Networks and Transport

Tools

SPiM (Caml / Unix-Win-Mac / CommandLine)
SPiM Player (F#-VS / .NET / GUI)